Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1492

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9859 and 9860 are separated by 769 nucleotides9860 and 9861 are separated by 137 nucleotides mRNA_1491: 9859 - K04513 RHOA Ras homolog gene family, member A, at 432,599 to 433,571 9859 mRNA_1492: 9860 - K12855 PRPF6, PRP6 pre-mRNA-processing factor 6, at 434,341 to 437,683 9860 mRNA_1493: 9861 - KOG1981 SOK1 kinase belonging to the STE20/SPS1/GC kinase family, at 437,821 to 440,939 9861

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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433,836 - -1.7
433,866 - -0.7
433,874 - -0.7
433,895 + -0.6
433,924 - +0.1
434,004 - -0.9
434,015 + -1.4
434,140 - -2.1
434,286 + -0.9
434,298 + -1.5
435,257 - 9860 mRNA_1492 0.27 -0.3
437,829 - -0.6
437,836 + +0.1
438,107 - -0.2
438,253 + 9861 mRNA_1493 0.14 -2.4
438,265 + 9861 mRNA_1493 0.14 -0.2
438,349 - 9861 mRNA_1493 0.17 -0.1
438,527 - 9861 mRNA_1493 0.23 -0.1
438,544 - 9861 mRNA_1493 0.23 +1.2
438,629 - 9861 mRNA_1493 0.26 +0.9

Or see this region's nucleotide sequence