Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1500

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9867 and 9868 are separated by 699 nucleotides9868 and 9869 are separated by 231 nucleotides mRNA_1499: 9867 - KOG1231 Proteins containing the FAD binding domain, at 455,664 to 457,570 9867 mRNA_1500: 9868 - K05770 TSPO, BZRP benzodiazapine receptor, at 458,270 to 459,039 9868 mRNA_1501: 9869 - Hypothetical Protein, at 459,271 to 459,744 9869

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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457,385 - -1.9
457,454 + -0.9
457,456 - +2.6
457,456 - -0.7
457,699 - +0.6
457,732 - -2.3
457,796 - +0.0
457,804 - +0.1
457,807 + -0.4
457,834 - +0.1
457,836 - +0.0
457,843 - +1.8
457,887 + +0.3
457,889 + -1.2
457,896 - +0.2
457,898 - +0.5
457,916 - +1.3
457,922 - -0.0
457,938 - -0.3
458,033 - -0.3
458,046 + +0.1
458,061 + -0.4
458,062 - -1.5
458,151 - -1.3
458,176 + +0.7
458,319 + +0.8
458,335 - -0.2
458,775 - 9868 mRNA_1500 0.66 +0.6
459,070 - -1.4
459,183 + -1.2
459,198 - -0.5
459,205 - +0.5
459,209 + +0.3
459,216 - -0.7
459,225 + -0.2
459,243 - +1.5
459,243 - -0.9
459,244 - +1.2
459,245 - -0.1
459,256 - -1.0
459,257 + -1.9
459,270 - -0.8
459,313 - +0.5
459,326 + 9869 mRNA_1501 0.12 -0.8
459,329 + 9869 mRNA_1501 0.12 -1.2
459,339 - 9869 mRNA_1501 0.14 -0.6
459,342 + 9869 mRNA_1501 0.15 -0.6
459,351 + 9869 mRNA_1501 0.17 +0.6
459,360 + 9869 mRNA_1501 0.19 -1.0
459,360 + 9869 mRNA_1501 0.19 +0.4
459,461 - 9869 mRNA_1501 0.40 -1.5
459,468 - 9869 mRNA_1501 0.42 -0.0
459,471 - 9869 mRNA_1501 0.42 -0.0
459,478 + 9869 mRNA_1501 0.44 +0.1
459,482 - 9869 mRNA_1501 0.45 -0.9
459,482 - 9869 mRNA_1501 0.45 +2.2
459,485 + 9869 mRNA_1501 0.45 -0.8
459,487 - 9869 mRNA_1501 0.46 +1.1
459,488 - 9869 mRNA_1501 0.46 +1.8
459,488 + 9869 mRNA_1501 0.46 +1.5
459,488 + 9869 mRNA_1501 0.46 +1.2
459,492 - 9869 mRNA_1501 0.47 -0.4
459,504 + 9869 mRNA_1501 0.49 +0.1
459,532 + 9869 mRNA_1501 0.55 -0.4
459,633 - 9869 mRNA_1501 0.76 -0.7
459,639 - 9869 mRNA_1501 0.78 -0.6
459,752 - +0.8
459,771 + +0.0
459,771 - -1.7
459,797 - -0.1
459,797 - +1.4
459,812 + -0.9
459,815 + -0.4
459,839 - +0.3
459,891 + -1.1
459,959 - +0.9
459,962 + +1.4

Or see this region's nucleotide sequence