Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1541

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9909 and 9910 are separated by 456 nucleotides mRNA_1541: 9909 - K14753 RACK1 guanine nucleotide-binding protein subunit beta-2-like 1 protein, at 549,088 to 551,017 9909 mRNA_1542: 9910 - K01834 PGAM, gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 551,474 to 552,455 9910

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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548,524 - -0.6
548,536 - +1.0
548,549 + -0.2
548,705 - +1.4
548,784 + +1.0
548,831 - -0.2
548,839 - -1.7
548,844 + -0.0
550,043 - 9909 mRNA_1541 0.49 -1.2
551,163 - -0.8
551,227 - -0.2
551,491 - -1.7

Or see this region's nucleotide sequence