Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1605

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9972 and 9973 are separated by 94 nucleotides9973 and 9974 are separated by 412 nucleotides mRNA_1604: 9972 - K02209 MCM5, CDC46 DNA replication licensing factor MCM5, at 700,738 to 703,638 9972 mRNA_1605: 9973 - Hypothetical Protein, at 703,733 to 704,608 9973 mRNA_1606: 9974 - Hypothetical Protein, at 705,021 to 705,665 9974

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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703,692 - -0.3
703,707 - -1.1
703,708 - +1.9
703,716 - +1.4
703,738 + +0.2
703,754 + -1.3
703,854 - 9973 mRNA_1605 0.14 +0.2
703,875 + 9973 mRNA_1605 0.16 +1.7
704,175 - 9973 mRNA_1605 0.50 -0.7
704,288 + 9973 mRNA_1605 0.63 +1.5
704,464 - 9973 mRNA_1605 0.83 +0.4
704,584 - -1.1
704,592 + +0.1
704,920 + +0.5
704,924 + +1.0
704,948 - +0.4
705,219 - 9974 mRNA_1606 0.31 -1.6
705,342 + 9974 mRNA_1606 0.50 -0.0

Or see this region's nucleotide sequence