Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1612

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9979 and 9980 are separated by 261 nucleotides9980 and 9981 are separated by 180 nucleotides mRNA_1611: 9979 - K04708 E1.1.1.102 3-dehydrosphinganine reductase, at 715,902 to 717,266 9979 mRNA_1612: 9980 - Hypothetical Protein, at 717,528 to 719,368 9980 mRNA_1613: 9981 - K01228 GCS1 mannosyl-oligosaccharide glucosidase, at 719,549 to 722,839 9981

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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717,311 + +0.3
717,921 - 9980 mRNA_1612 0.21 +0.3
718,184 + 9980 mRNA_1612 0.36 -0.6
718,242 + 9980 mRNA_1612 0.39 +0.5
718,812 + 9980 mRNA_1612 0.70 +1.2
718,897 + 9980 mRNA_1612 0.74 +0.5
719,049 + 9980 mRNA_1612 0.83 +0.4
719,052 - 9980 mRNA_1612 0.83 +2.0
719,073 + 9980 mRNA_1612 0.84 +0.3
719,100 + 9980 mRNA_1612 0.85 -0.5
719,203 + +3.8
719,507 + -0.1
719,581 - -1.5
720,237 - 9981 mRNA_1613 0.21 -0.6

Or see this region's nucleotide sequence