Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1655

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10023 and 10024 are separated by 121 nucleotides mRNA_1655: 10023 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 819,421 to 820,962 10023 mRNA_1656: 10024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 821,084 to 822,700 10024

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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818,515 + +0.5
818,519 + -0.3
818,550 + -2.2
818,645 - -0.9
818,812 - -1.2
818,820 + -1.9
818,824 + -1.0
819,076 - -1.6
819,090 + -1.0
819,108 + -1.9
819,232 - -3.8
819,250 + +0.7
819,253 - +0.6
819,254 - -0.2
819,263 - -1.3
819,385 + +0.2
819,397 - -2.3
819,408 - +0.2
819,419 + -0.9
819,686 - 10023 mRNA_1655 0.17 -2.3
819,734 + 10023 mRNA_1655 0.20 -2.3
819,866 - 10023 mRNA_1655 0.29 -0.6
820,282 + 10023 mRNA_1655 0.56 -1.9
820,577 - 10023 mRNA_1655 0.75 -2.1
820,706 - 10023 mRNA_1655 0.83 -1.7
820,713 + 10023 mRNA_1655 0.84 -0.9
820,718 - 10023 mRNA_1655 0.84 -0.5
820,720 - 10023 mRNA_1655 0.84 +0.6
820,861 - -1.5
820,862 + -0.8
821,020 + -1.5
821,031 + -1.0
821,036 + -1.7
821,038 - +0.9
821,040 + +0.3
821,047 + -1.7
821,191 - -0.6

Or see this region's nucleotide sequence