Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1658

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10026 and 10027 are separated by 810 nucleotides mRNA_1658: 10026 - K02893 RP-L23Ae, RPL23A large subunit ribosomal protein L23Ae, at 826,831 to 828,048 10026 mRNA_1659: 10027 - K08741 MSH5 DNA mismatch repair protein MSH5, at 828,859 to 833,266 10027

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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825,974 - -2.4
826,107 + -0.2
826,109 - -0.5
826,116 + +0.5
826,139 - -2.8
826,260 + -2.4
826,273 + -1.6
826,442 + -4.3
826,452 - -0.2
826,454 + +0.7
826,456 + -1.4
826,462 - -4.5
826,463 - -1.1
826,464 + -0.4
826,464 + -0.2
826,469 + -0.4
826,575 - -1.8
826,590 + +1.3
826,598 - -1.4
826,601 + -1.2
826,618 + -2.2
826,624 + -1.0
826,757 + -1.5
828,235 + -1.1
828,264 + -2.0
828,271 + +0.5
828,272 + -0.9
828,277 + -2.8
828,417 + -1.5
828,720 - -0.4
829,001 + -2.5
829,022 - -1.4

Or see this region's nucleotide sequence