Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1671

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10038 and 10039 are separated by 708 nucleotides10039 and 10040 are separated by 620 nucleotides mRNA_1670: 10038 - K15918 GLYK D-glycerate 3-kinase, at 851,334 to 852,644 10038 mRNA_1671: 10039 - K13344 PEX13 peroxin-13, at 853,353 to 854,767 10039 mRNA_1672: 10040 - K00382 DLD, lpd, pdhD dihydrolipoamide dehydrogenase, at 855,388 to 857,888 10040

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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852,378 - 10038 mRNA_1670 0.80 -0.1
852,643 - +1.0
852,811 - -0.1
852,952 + -1.1
852,956 - -2.1
852,976 - -0.2
853,104 - -1.4
853,126 - -0.4
853,132 + -1.0
853,247 - -3.1
853,406 + -0.0
854,730 - -4.3
854,770 - -3.3
855,033 - -1.3
855,186 + -1.5
855,194 + -0.4
855,306 - -2.0
855,317 - -1.1
855,322 + -0.9
855,323 - +0.4
855,355 + -1.5

Or see this region's nucleotide sequence