Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1700

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10067 and 10068 are separated by 258 nucleotides10068 and 10069 are separated by 293 nucleotides mRNA_1699: 10067 - K10751 CHAF1B chromatin assembly factor 1 subunit B, at 923,686 to 926,901 10067 mRNA_1700: 10068 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 927,160 to 928,283 10068 mRNA_1701: 10069 - K03522 fixB, etfA electron transfer flavoprotein alpha subunit, at 928,577 to 930,398 10069

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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926,791 - -0.3
926,808 + -0.6
927,066 - -0.5
927,098 - -1.8
927,217 + -2.4
927,342 - 10068 mRNA_1700 0.16 -2.0
927,398 + 10068 mRNA_1700 0.21 -1.5
927,424 - 10068 mRNA_1700 0.23 -0.7
927,551 + 10068 mRNA_1700 0.35 +0.1
927,678 + 10068 mRNA_1700 0.46 +0.7
927,824 + 10068 mRNA_1700 0.59 +0.0
927,840 + 10068 mRNA_1700 0.60 -1.7
927,872 + 10068 mRNA_1700 0.63 -0.0
927,928 + 10068 mRNA_1700 0.68 -0.9
928,148 + 10068 mRNA_1700 0.88 +0.4
928,412 + -2.1
928,415 - -0.1
928,420 + +0.9
928,562 + -1.0
928,563 + +0.6
928,821 - 10069 mRNA_1701 0.13 -3.5
928,875 + 10069 mRNA_1701 0.16 -2.6

Or see this region's nucleotide sequence