Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1705

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10072 and 10073 are separated by 416 nucleotides mRNA_1704: 10072 - K17777 TIM9 mitochondrial import inner membrane translocase subunit TIM9, at 936,376 to 936,792 10072 mRNA_1705: 10073 - K03264 EIF6 translation initiation factor 6, at 937,209 to 938,526 10073

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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936,214 + +1.0
937,810 - 10073 mRNA_1705 0.46 -0.2
938,480 + -0.8
938,508 + -1.2
938,551 - -0.4
938,553 + -1.7
938,556 - -0.4
938,558 + -1.5
938,563 + -2.3
938,563 + -1.2
938,570 + -3.4
938,571 + -3.5
938,620 - -1.8
938,634 - -0.4
938,634 + -1.7
938,636 - -2.0
938,653 - -0.6
938,658 - -2.3
938,666 - -0.4
938,675 - -1.9
938,678 - -1.7
938,684 - -0.6
938,686 - -0.4
938,686 + -0.9
938,691 - -1.2
938,702 - -1.2

Or see this region's nucleotide sequence