Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10074 and 10075 overlap by 4 nucleotides mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1,191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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26 + -1.2
27 + +0.1
28 + -2.6
31 + -2.8
31 + -1.1
41 + -1.9
66 + -1.3
72 - -1.9
72 - -2.2
93 + -2.6
104 + -0.8
105 + -0.3
108 + -1.8
120 - -0.2
128 + -0.3
135 - -1.3
136 + -0.5
136 - -1.7
137 - -0.9
137 - -0.7
138 + -0.4
139 + +0.6
141 - -1.6
150 - -0.6
151 - +1.1
155 + -0.7
155 + +0.8
156 + -1.3
158 + -0.7
173 - -2.0
175 + +0.6
180 - -2.5
215 + -0.9
220 - -1.9
234 + -1.3
254 - -1.7
283 + -0.0
304 + -2.0
322 + +2.5
324 + -3.4
427 + -1.1
453 + 10074 mRNA_1706 0.13 -0.9
465 - 10074 mRNA_1706 0.14 +1.1
482 + 10074 mRNA_1706 0.16 +1.0
493 - 10074 mRNA_1706 0.18 +0.9
647 + 10074 mRNA_1706 0.36 -2.6
683 - 10074 mRNA_1706 0.40 -2.6
809 + 10074 mRNA_1706 0.55 -1.4
842 - 10074 mRNA_1706 0.59 -1.1
844 + 10074 mRNA_1706 0.59 +0.4
848 - 10074 mRNA_1706 0.59 +1.0
902 + 10074 mRNA_1706 0.66 -1.2
949 - 10074 mRNA_1706 0.71 +1.4
949 - 10074 mRNA_1706 0.71 +0.5
950 + 10074 mRNA_1706 0.71 -1.3
974 - 10074 mRNA_1706 0.74 -0.7
1,016 + 10074 mRNA_1706 0.79 +0.4
1,065 + 10074 mRNA_1706 0.85 -1.7
1,118 + -3.1
1,142 + -2.3
1,155 + -0.2
1,272 - -2.2
1,281 + -0.6
1,573 + 10075 mRNA_1707 0.23 +0.7
1,625 + 10075 mRNA_1707 0.27 -1.1
1,625 + 10075 mRNA_1707 0.27 -0.3
1,628 + 10075 mRNA_1707 0.27 -0.6
1,646 + 10075 mRNA_1707 0.28 -2.8
1,649 - 10075 mRNA_1707 0.28 -1.2
1,680 + 10075 mRNA_1707 0.30 -1.4
1,781 + 10075 mRNA_1707 0.36 +0.3
1,926 + 10075 mRNA_1707 0.45 -0.1
1,996 + 10075 mRNA_1707 0.49 -0.5
2,005 - 10075 mRNA_1707 0.50 -2.6
2,010 - 10075 mRNA_1707 0.50 +0.0
2,033 + 10075 mRNA_1707 0.51 +0.1
2,068 + 10075 mRNA_1707 0.53 +0.1
2,076 + 10075 mRNA_1707 0.54 +0.1

Or see this region's nucleotide sequence