Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1722

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10089 and 10090 are separated by 540 nucleotides mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32,428 to 34,334 10089 mRNA_1722: 10090 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 34,875 to 37,390 10090

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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34,606 + -2.2
34,704 + -2.6
34,710 + -1.2
34,717 + -0.9
34,753 - -1.9
34,868 + -2.1
34,948 - +0.3
35,013 - -0.7
35,040 + -0.6
35,159 - 10090 mRNA_1722 0.11 -0.5
35,168 + 10090 mRNA_1722 0.12 -3.4
35,466 + 10090 mRNA_1722 0.23 +0.1
35,672 + 10090 mRNA_1722 0.32 -2.6
35,841 + 10090 mRNA_1722 0.38 -0.2
36,014 + 10090 mRNA_1722 0.45 -1.3
36,174 - 10090 mRNA_1722 0.52 -0.5
36,204 + 10090 mRNA_1722 0.53 -0.6
36,285 + 10090 mRNA_1722 0.56 -1.4
36,292 + 10090 mRNA_1722 0.56 -0.1
36,324 + 10090 mRNA_1722 0.58 -1.0
36,375 + 10090 mRNA_1722 0.60 -1.3
36,465 + 10090 mRNA_1722 0.63 -1.8
36,602 + 10090 mRNA_1722 0.69 -2.2
36,611 + 10090 mRNA_1722 0.69 +0.1
36,720 - 10090 mRNA_1722 0.73 -2.5
36,746 + 10090 mRNA_1722 0.74 +0.8
36,965 + 10090 mRNA_1722 0.83 -2.0
37,032 - 10090 mRNA_1722 0.86 -0.5
37,050 - 10090 mRNA_1722 0.86 -1.3
37,145 + -2.4
37,166 + -2.3
37,194 - -1.1
37,194 + -0.4
37,356 + -2.1
37,457 + -0.1
37,470 + -0.0
37,473 + -0.7
37,476 + -1.0
37,481 + -1.8
37,501 + -2.9
37,595 + +0.4
37,628 + -1.2
37,631 + -1.4
37,660 + -0.5
37,703 - -2.4
37,717 - -1.4
37,735 - +0.7
37,831 - -0.8
37,837 + -0.7
37,921 - -1.8
37,933 - -1.7
37,934 + -2.7
37,934 + -1.7
37,938 + -3.0
37,950 - -1.2
37,951 + -2.5
37,984 - -1.5
38,063 + -1.0
38,063 - -1.3
38,074 - -3.1
38,075 - -0.5
38,083 + +0.5
38,091 - +0.1
38,140 - -0.0
38,248 - -0.9
38,249 - -0.8
38,366 + -0.3
38,384 + -1.6

Or see this region's nucleotide sequence