Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1768

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10135 and 10136 are separated by 203 nucleotides10136 and 10137 are separated by 756 nucleotides mRNA_1767: 10135 - HMMPfam-F-box-like-PF12937, at 154,773 to 156,142 10135 mRNA_1768: 10136 - K01858 INO1, ISYNA1 myo-inositol-1-phosphate synthase, at 156,346 to 158,351 10136 mRNA_1769: 10137 - Interpro F-box-like 0, at 159,108 to 161,176 10137

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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155,889 - 10135 mRNA_1767 0.81 -3.6
155,896 - 10135 mRNA_1767 0.82 -3.1
155,922 + 10135 mRNA_1767 0.84 +0.5
155,995 - 10135 mRNA_1767 0.89 -0.4
155,998 - 10135 mRNA_1767 0.89 +0.4
156,003 + 10135 mRNA_1767 0.90 -2.8
156,026 + -0.9
156,175 + -0.4
156,185 - -2.9
156,188 + -0.4
156,221 - -2.0
156,323 - -1.6
156,342 + -1.8
156,385 - -1.6
156,471 - -1.1
156,553 - 10136 mRNA_1768 0.10 -2.0
156,564 + 10136 mRNA_1768 0.11 -0.9
156,594 - 10136 mRNA_1768 0.12 -3.2
156,611 + 10136 mRNA_1768 0.13 -2.5
156,802 + 10136 mRNA_1768 0.23 -2.2
157,183 - 10136 mRNA_1768 0.42 -1.0
157,228 + 10136 mRNA_1768 0.44 +0.7
157,331 + 10136 mRNA_1768 0.49 -2.4
157,527 - 10136 mRNA_1768 0.59 -1.4
157,642 - 10136 mRNA_1768 0.65 -0.6
157,808 - 10136 mRNA_1768 0.73 -0.8
157,837 + 10136 mRNA_1768 0.74 -3.3
157,992 + 10136 mRNA_1768 0.82 -0.3
158,107 - 10136 mRNA_1768 0.88 -0.9
158,117 + 10136 mRNA_1768 0.88 +0.2
158,121 - 10136 mRNA_1768 0.88 -0.9
158,230 - -1.8
158,550 + -2.9
158,554 + -0.9
158,571 + -1.0
158,585 + +0.4
158,671 + -4.2
158,704 - -0.3
158,711 - -1.7
158,724 - -1.3
158,736 - -0.0
158,738 + -1.9
158,741 + -0.3
158,758 + -2.3
158,834 - -2.3
158,845 - -0.9
158,856 + -0.3
158,859 - -0.5
158,867 - -0.6
158,867 + -0.3
158,875 + -2.2
158,879 - -2.3
158,879 + -0.8
158,900 + -1.6
158,901 - -2.7
158,914 + -3.3
158,915 - -1.5
158,976 - -2.2
158,981 + -1.6
158,982 - -1.2
158,987 + -1.4
158,988 - +0.1
158,992 - -0.4
158,995 + -0.6
158,999 + -2.3
159,001 - -0.7
159,010 - +0.7
159,011 + -1.0
159,017 + -1.2
159,022 + -1.9
159,036 + +0.8
159,036 + -1.5
159,042 + -2.9
159,055 + -0.2
159,183 - +0.4
159,225 + -0.3
159,329 - 10137 mRNA_1769 0.11 -0.2
159,339 - 10137 mRNA_1769 0.11 -1.2
159,348 + 10137 mRNA_1769 0.12 -1.5

Or see this region's nucleotide sequence