Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1774

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10141 and 10142 are separated by 252 nucleotides10142 and 10143 are separated by 285 nucleotides mRNA_1773: 10141 - Hypothetical Protein, at 171,350 to 172,928 10141 mRNA_1774: 10142 - Hypothetical Protein, at 173,181 to 173,906 10142 mRNA_1775: 10143 - KOG1289 Amino acid transporters, at 174,192 to 176,320 10143

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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172,295 + 10141 mRNA_1773 0.60 -1.5
172,304 - 10141 mRNA_1773 0.60 -0.5
172,430 + 10141 mRNA_1773 0.68 +0.1
172,798 + -3.2
172,878 - -0.0
172,916 - -2.0
172,933 + +0.9
173,158 - -2.9
173,224 + -1.1
173,309 - 10142 mRNA_1774 0.18 +0.2
173,366 + 10142 mRNA_1774 0.25 -3.4
173,398 + 10142 mRNA_1774 0.30 +1.0
173,504 + 10142 mRNA_1774 0.44 -2.4
173,512 + 10142 mRNA_1774 0.46 -2.4
173,596 + 10142 mRNA_1774 0.57 -0.0
173,634 + 10142 mRNA_1774 0.62 -1.6
173,650 + 10142 mRNA_1774 0.65 -3.3
173,899 - +1.1
173,986 + +0.2
174,073 - -1.0
174,104 - -1.5
174,126 + -1.1
174,238 + -2.1
174,377 + -3.9
174,562 - 10143 mRNA_1775 0.17 -0.7
174,565 + 10143 mRNA_1775 0.18 +1.8

Or see this region's nucleotide sequence