Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1879

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10246 and 10247 are separated by 364 nucleotides10247 and 10248 are separated by 141 nucleotides mRNA_1878: 10246 - K01875 SARS, serS seryl-tRNA synthetase, at 420,852 to 422,750 10246 mRNA_1879: 10247 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 423,115 to 424,156 10247 mRNA_1880: 10248 - KOG0254 Predicted transporter (major facilitator superfamily), at 424,298 to 426,105 10248

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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422,922 - -1.9
422,929 - -0.4
422,933 + +1.6
422,950 - -0.9
423,367 - 10247 mRNA_1879 0.24 -1.7
423,393 - 10247 mRNA_1879 0.27 +0.0
423,670 + 10247 mRNA_1879 0.53 -1.8
423,684 + 10247 mRNA_1879 0.55 -2.2
423,933 + 10247 mRNA_1879 0.79 -0.5
423,935 - 10247 mRNA_1879 0.79 -1.8
423,939 - 10247 mRNA_1879 0.79 -0.5
423,981 + 10247 mRNA_1879 0.83 -3.0
424,131 - -1.8
424,314 - -2.1
424,586 - 10248 mRNA_1880 0.16 -2.7

Or see this region's nucleotide sequence