Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1890

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10256 and 10257 are separated by 89 nucleotides10257 and 10258 are separated by 69 nucleotides10258 and 10259 are separated by 594 nucleotides mRNA_1888: 10256 - HMMPfam-Protein of unknown function (DUF2423)-PF10338, at 441,171 to 441,971 10256 mRNA_1889: 10257 - Hypothetical Protein, at 442,061 to 442,321 10257 mRNA_1890: 10258 - Hypothetical Protein, at 442,391 to 442,819 10258 mRNA_1891: 10259 - K03083 GSK3B glycogen synthase kinase 3 beta, at 443,414 to 444,929 10259

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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441,395 + 10256 mRNA_1888 0.28 -0.1
441,540 - 10256 mRNA_1888 0.46 +2.0
441,677 + 10256 mRNA_1888 0.63 -1.6
441,942 + -0.9
441,963 + -2.7
441,975 + -0.6
441,976 + +0.5
441,977 + -2.0
441,977 - -0.7
441,992 + -0.6
442,113 + 10257 mRNA_1889 0.20 +1.8
442,127 + 10257 mRNA_1889 0.25 -1.2
442,128 - 10257 mRNA_1889 0.26 -1.2
442,129 - 10257 mRNA_1889 0.26 -1.7
442,133 + 10257 mRNA_1889 0.28 -3.8
442,152 + 10257 mRNA_1889 0.35 +1.0
442,165 + 10257 mRNA_1889 0.40 -3.4
442,172 - 10257 mRNA_1889 0.43 -0.0
442,177 + 10257 mRNA_1889 0.44 +0.3
442,180 - 10257 mRNA_1889 0.46 -0.4
442,183 - 10257 mRNA_1889 0.47 -1.6
442,210 + 10257 mRNA_1889 0.57 -0.2
442,221 - 10257 mRNA_1889 0.61 -1.1
442,222 - 10257 mRNA_1889 0.62 -0.8
442,227 - 10257 mRNA_1889 0.64 -0.5
442,230 - 10257 mRNA_1889 0.65 -2.0
442,231 - 10257 mRNA_1889 0.65 -1.1
442,233 + 10257 mRNA_1889 0.66 -1.6
442,234 + 10257 mRNA_1889 0.66 -2.5
442,234 - 10257 mRNA_1889 0.66 -2.7
442,234 + 10257 mRNA_1889 0.66 -1.0
442,236 - 10257 mRNA_1889 0.67 -1.7
442,237 - 10257 mRNA_1889 0.67 -1.7
442,238 - 10257 mRNA_1889 0.68 -0.6
442,240 + 10257 mRNA_1889 0.69 -0.7
442,240 + 10257 mRNA_1889 0.69 -0.4
442,246 + 10257 mRNA_1889 0.71 -0.3
442,249 + 10257 mRNA_1889 0.72 -0.4
442,274 - 10257 mRNA_1889 0.82 +0.1
442,275 - 10257 mRNA_1889 0.82 -2.5
442,276 + 10257 mRNA_1889 0.82 -2.2
442,276 + 10257 mRNA_1889 0.82 -1.1
442,277 - 10257 mRNA_1889 0.83 -1.9
442,281 + 10257 mRNA_1889 0.84 -1.4
442,281 - 10257 mRNA_1889 0.84 -2.9
442,281 - 10257 mRNA_1889 0.84 -0.8
442,290 - 10257 mRNA_1889 0.88 -2.9
442,291 - 10257 mRNA_1889 0.88 -1.2
442,293 - 10257 mRNA_1889 0.89 -2.8
442,293 + 10257 mRNA_1889 0.89 -0.7
442,407 - -0.2
442,410 + -0.2
442,427 - -1.8
442,431 - -0.7
442,444 - 10258 mRNA_1890 0.12 -1.5
442,460 - 10258 mRNA_1890 0.16 -1.8
442,466 + 10258 mRNA_1890 0.17 -1.5
442,553 + 10258 mRNA_1890 0.38 -2.0
442,605 - 10258 mRNA_1890 0.50 -1.4
442,623 + 10258 mRNA_1890 0.54 -0.6
442,763 + 10258 mRNA_1890 0.87 +0.9
442,919 - -1.8
442,927 + -0.0
442,927 + -2.6
442,946 + +0.0
442,947 + -2.2
443,113 + -1.8
443,225 - -1.1

Or see this region's nucleotide sequence