Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1895

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10262 and 10263 are separated by 115 nucleotides10263 and 10264 are separated by 498 nucleotides mRNA_1894: 10262 - K01253 EPHX1 microsomal epoxide hydrolase, at 450,582 to 452,258 10262 mRNA_1895: 10263 - K09247 CYP1, HAP1 heme activator protein 1, at 452,374 to 455,740 10263 mRNA_1896: 10264 - K00844 HK hexokinase, at 456,239 to 458,071 10264

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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451,387 + 10262 mRNA_1894 0.48 -1.8
451,550 + 10262 mRNA_1894 0.58 -1.2
451,556 - 10262 mRNA_1894 0.58 +1.5
451,662 + 10262 mRNA_1894 0.64 -0.8
451,834 + 10262 mRNA_1894 0.75 -1.9
452,384 + -2.6
452,396 - -1.1
452,559 + +0.5
453,103 - 10263 mRNA_1895 0.22 -0.7
453,174 + 10263 mRNA_1895 0.24 -0.7
453,401 - 10263 mRNA_1895 0.31 -1.8
453,700 + 10263 mRNA_1895 0.39 -0.0
453,719 + 10263 mRNA_1895 0.40 -0.1
453,849 - 10263 mRNA_1895 0.44 -1.2
453,856 + 10263 mRNA_1895 0.44 -0.6
453,867 + 10263 mRNA_1895 0.44 -0.1
453,911 + 10263 mRNA_1895 0.46 +0.2
453,925 + 10263 mRNA_1895 0.46 -3.1
454,020 + 10263 mRNA_1895 0.49 -3.1
454,183 + 10263 mRNA_1895 0.54 +1.7
454,437 - 10263 mRNA_1895 0.61 -1.8
455,094 - 10263 mRNA_1895 0.81 -2.6
455,191 - 10263 mRNA_1895 0.84 -1.8
455,244 - 10263 mRNA_1895 0.85 -0.3
455,321 - 10263 mRNA_1895 0.88 +0.2
455,622 - -0.9
455,627 + +0.7
455,637 + -0.3
455,645 + -0.8
455,656 + -1.4
455,776 - -1.3
455,798 - -3.0
455,824 + -2.3
455,922 - -0.9
455,934 - +0.1
455,950 - -1.3
455,955 + -3.1
455,955 + -1.9
455,957 + -0.9
455,963 + -0.8
455,968 + +0.5
455,968 + -0.4
455,970 - -3.9
456,078 - -2.4
456,098 - -0.4
456,102 - -1.3
456,122 + -3.4
456,226 - -1.2
456,243 + -0.3
456,264 - -0.8
456,393 - -0.8
456,408 - -0.9
456,524 + 10264 mRNA_1896 0.16 -0.3
456,533 - 10264 mRNA_1896 0.16 -1.3
456,538 - 10264 mRNA_1896 0.16 -2.1
456,546 + 10264 mRNA_1896 0.17 -1.2
456,549 + 10264 mRNA_1896 0.17 -3.2
456,550 + 10264 mRNA_1896 0.17 -0.3
456,558 + 10264 mRNA_1896 0.17 -1.6
456,564 + 10264 mRNA_1896 0.18 -0.9
456,583 - 10264 mRNA_1896 0.19 -1.3

Or see this region's nucleotide sequence