Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1986

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10354 and 10355 are separated by 690 nucleotides mRNA_1986: 10354 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 673,978 to 676,416 10354 mRNA_1987: 10355 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 677,107 to 679,198 10355

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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673,624 - -2.3
673,653 + -0.9
673,666 - -1.7
673,675 - +0.0
673,759 + -2.9
673,801 + +0.1
673,809 + -2.1
673,812 - -1.3
673,986 - -0.3
674,128 - -0.0
675,505 - 10354 mRNA_1986 0.63 -1.9
676,428 - -0.9
676,566 - -2.9
676,605 + -0.5
676,729 - -0.5
676,834 - +0.4
676,890 + -1.1
677,009 - -2.1
677,173 - -0.0
677,187 + -1.3
677,320 - 10355 mRNA_1987 0.10 -3.7

Or see this region's nucleotide sequence