Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2028

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10395 and 10396 are separated by 958 nucleotides mRNA_2027: 10395 - K07208 RHEB Ras homolog enriched in brain, at 780,264 to 781,182 10395 mRNA_2028: 10396 - HMMPfam-TENA/THI-4/PQQC family-PF03070,SUPERFAMILY--SSF48613, at 782,141 to 783,596 10396

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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781,229 + -0.6
781,478 + -3.5
781,493 + -3.5
781,503 + -0.4
781,520 + -1.2
781,678 + -0.4
781,768 - +0.4
781,791 - -1.9
781,807 - -0.2
781,811 + -1.2
781,900 - -1.0
781,917 - -1.5
781,927 + -2.3
781,932 - +0.7
781,936 + -1.7
782,075 - +0.7
782,082 + -1.2
782,084 + -0.3
782,085 - -1.9
782,085 - +0.2
782,086 - -2.7
782,092 + -0.8
782,096 + -1.8
782,097 + -1.3
782,123 + -1.1
782,124 - +0.5
782,212 - -4.8
782,214 + -0.4
782,238 + -0.3
782,238 - -2.0
782,248 + -3.2
782,256 + -1.0
782,262 + -0.6
782,277 + +0.4
782,369 - 10396 mRNA_2028 0.16 +1.1
782,381 + 10396 mRNA_2028 0.16 +0.2
782,391 + 10396 mRNA_2028 0.17 -1.0
782,395 + 10396 mRNA_2028 0.17 -1.8
782,400 - 10396 mRNA_2028 0.18 -1.9
782,437 + 10396 mRNA_2028 0.20 -0.9
782,439 + 10396 mRNA_2028 0.20 -1.6
782,571 - 10396 mRNA_2028 0.30 -3.2
782,694 - 10396 mRNA_2028 0.38 -0.9
782,803 - 10396 mRNA_2028 0.45 -2.5
783,399 - 10396 mRNA_2028 0.86 -1.2
783,439 + 10396 mRNA_2028 0.89 -0.2
783,695 + -1.0
783,833 - -1.0
783,854 + -1.1
783,858 - -2.5
783,914 + -1.5
784,091 + -0.2
784,114 - -0.7
784,147 - -0.2
784,181 - +0.5
784,187 + -0.5
784,201 + -1.7
784,309 - -2.7
784,318 - -0.2
784,335 + -1.3
784,339 + -2.8
784,493 - -3.3
784,508 - +0.9
784,526 + -1.4
784,546 - -0.5
784,574 + -0.6

Or see this region's nucleotide sequence