Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2037

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10404 and 10405 are separated by 771 nucleotides10405 and 10406 are separated by 12 nucleotides mRNA_2036: 10404 - HMMPfam-Alpha and gamma adaptin binding protein p34-PF10199, at 804,134 to 805,617 10404 mRNA_2037: 10405 - Hypothetical Protein, at 806,389 to 807,325 10405 mRNA_2038: 10406 - Hypothetical Protein, at 807,338 to 808,315 10406

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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805,799 + +0.9
806,109 - -0.3
806,122 - -0.5
806,129 + -0.0
806,251 - -0.8
806,259 - -2.0
806,358 - +0.0
806,366 + -1.6
806,403 + -1.5
806,482 + -0.1
806,531 + 10405 mRNA_2037 0.15 +0.2
806,595 - 10405 mRNA_2037 0.22 -1.0
806,596 - 10405 mRNA_2037 0.22 -1.6
806,600 + 10405 mRNA_2037 0.23 -2.2
806,613 + 10405 mRNA_2037 0.24 -2.1
806,630 - 10405 mRNA_2037 0.26 +2.5
806,653 + 10405 mRNA_2037 0.28 -4.0
806,708 + 10405 mRNA_2037 0.34 -1.9
806,738 + 10405 mRNA_2037 0.37 -1.9
806,749 - 10405 mRNA_2037 0.38 -2.6
806,755 + 10405 mRNA_2037 0.39 -1.0
806,833 - 10405 mRNA_2037 0.47 -2.8
807,003 + 10405 mRNA_2037 0.66 -1.5
807,047 - 10405 mRNA_2037 0.70 -1.7
807,096 + 10405 mRNA_2037 0.75 -1.7
807,115 + 10405 mRNA_2037 0.77 -1.8
807,119 - 10405 mRNA_2037 0.78 -1.0
807,559 - 10406 mRNA_2038 0.23 -4.3
807,687 + 10406 mRNA_2038 0.36 +0.2
808,295 + -0.5

Or see this region's nucleotide sequence