Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2155

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10522 and 10523 are separated by 359 nucleotides10523 and 10524 are separated by 536 nucleotides mRNA_2154: 10522 - KOG2689 Predicted ubiquitin regulatory protein, at 202,744 to 204,130 10522 mRNA_2155: 10523 - Hypothetical Protein, at 204,490 to 205,403 10523 mRNA_2156: 10524 - Hypothetical Protein, at 205,940 to 207,081 10524

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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203,528 - 10522 mRNA_2154 0.57 -1.0
203,603 - 10522 mRNA_2154 0.62 -0.9
203,841 + 10522 mRNA_2154 0.79 -0.8
203,911 + 10522 mRNA_2154 0.84 -1.3
204,211 - +1.4
204,304 + -1.7
204,319 - -4.3
204,599 + 10523 mRNA_2155 0.12 -2.6
204,669 + 10523 mRNA_2155 0.20 -0.1
204,707 + 10523 mRNA_2155 0.24 -2.1
204,711 + 10523 mRNA_2155 0.24 -1.9
204,739 - 10523 mRNA_2155 0.27 +0.2
204,854 - 10523 mRNA_2155 0.40 +0.2
205,122 + 10523 mRNA_2155 0.69 -1.3
205,131 - 10523 mRNA_2155 0.70 -0.2
205,178 + 10523 mRNA_2155 0.75 -1.2
205,210 + 10523 mRNA_2155 0.79 -0.8
205,302 + 10523 mRNA_2155 0.89 -1.1
205,453 - -2.9
205,556 + -2.2
205,635 + -0.4
205,705 - -1.0
205,740 + +0.4
205,740 + -1.6
205,749 + -1.9
206,047 + -0.6

Or see this region's nucleotide sequence