Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2159

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10526 and 10527 are separated by 357 nucleotides mRNA_2158: 10526 - K14550 UTP10, HEATR1 U3 small nucleolar RNA-associated protein 10, at 209,112 to 215,821 10526 mRNA_2159: 10527 - K03263 EIF5A translation initiation factor 5A, at 216,179 to 217,701 10527

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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215,747 - -1.3
215,890 + -2.6
215,897 - -0.6
215,909 + -0.2
215,909 + -0.4
216,089 + -1.2
216,101 - -0.6
216,101 + -2.1
216,107 - -0.8
216,108 - -0.7
216,117 - -3.0
216,119 + -1.9
216,122 + -2.1
216,123 + +1.2
216,127 + -1.3
217,682 - +0.0
218,307 + +0.2

Or see this region's nucleotide sequence