Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2250

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10617 and 10618 are separated by 151 nucleotides10618 and 10619 are separated by 403 nucleotides mRNA_2249: 10617 - K10753 ASF1 histone chaperone ASF1, at 463,565 to 464,577 10617 mRNA_2250: 10618 - HMMPfam-Apolipoprotein O-PF09769, at 464,729 to 465,798 10618 mRNA_2251: 10619 - KOG3313 Molecular chaperone Prefoldin, subunit 3, at 466,202 to 467,815 10619

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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464,631 + -0.1
464,640 + -2.8
464,649 - -1.6
464,651 + -2.9
464,655 + -0.6
464,658 + -2.8
464,661 + -0.8
464,668 - -0.1
464,835 - -0.3
464,835 - -4.1
464,840 + 10618 mRNA_2250 0.10 -2.5
464,844 + 10618 mRNA_2250 0.11 -0.9
464,845 - 10618 mRNA_2250 0.11 -0.6
464,845 - 10618 mRNA_2250 0.11 +0.4
465,007 + 10618 mRNA_2250 0.26 -0.6
465,142 - 10618 mRNA_2250 0.39 -0.7
465,280 - 10618 mRNA_2250 0.51 -2.6
465,325 + 10618 mRNA_2250 0.56 -0.7
465,446 - 10618 mRNA_2250 0.67 -1.3
465,560 - 10618 mRNA_2250 0.78 -1.4
465,572 + 10618 mRNA_2250 0.79 +0.9
465,572 + 10618 mRNA_2250 0.79 -2.0
465,736 - -2.1
465,742 + -1.5
465,744 + -2.3
465,992 + -1.1
465,993 - -2.0
466,010 + -1.3
466,029 - -1.4
466,142 - -1.5
466,158 + -1.6
466,699 + 10619 mRNA_2251 0.31 -3.3
466,777 + 10619 mRNA_2251 0.36 -2.0

Or see this region's nucleotide sequence