Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2260

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10627 and 10628 are separated by 269 nucleotides10628 and 10629 are separated by 349 nucleotides mRNA_2259: 10627 - K02933 RP-L6, MRPL6, rplF large subunit ribosomal protein L6, at 478,240 to 479,053 10627 mRNA_2260: 10628 - K03027 RPC40, POLR1C DNA-directed RNA polymerases I and III subunit RPAC1, at 479,323 to 480,652 10628 mRNA_2261: 10629 - K12670 WBP1 oligosaccharyltransferase complex subunit beta, at 481,002 to 482,394 10629

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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479,096 - +0.4
479,103 - -2.4
479,109 - -4.9
479,111 - -1.7
480,724 - -1.4
480,739 - -2.4
480,741 - -1.6
480,829 - -0.1
480,836 + -0.7
480,865 + -2.4
480,871 - -0.2
480,876 - -0.0
480,877 + +0.1
480,891 - -1.4
480,899 + -1.6
480,900 + -1.0

Or see this region's nucleotide sequence