Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2302

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10669 and 10670 are separated by 338 nucleotides10670 and 10671 are separated by 905 nucleotides mRNA_2301: 10669 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 560,287 to 562,676 10669 mRNA_2302: 10670 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 563,015 to 564,806 10670 mRNA_2303: 10671 - Hypothetical Protein, at 565,712 to 566,657 10671

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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562,138 - 10669 mRNA_2301 0.77 -2.7
562,584 - +1.7
562,611 + -1.8
562,742 - -0.9
562,890 - +1.2
563,057 + -1.6
563,061 - -2.7
563,175 - -3.4
563,531 + 10670 mRNA_2302 0.29 -2.2
563,792 + 10670 mRNA_2302 0.43 -3.7
563,948 + 10670 mRNA_2302 0.52 -3.6
564,255 + 10670 mRNA_2302 0.69 -2.0
564,390 + 10670 mRNA_2302 0.77 -1.2
564,394 - 10670 mRNA_2302 0.77 -1.2
564,399 + 10670 mRNA_2302 0.77 +0.5
564,408 + 10670 mRNA_2302 0.78 -0.4
564,551 - 10670 mRNA_2302 0.86 -0.6
564,559 + 10670 mRNA_2302 0.86 -0.3
564,568 + 10670 mRNA_2302 0.87 +0.7
564,576 - 10670 mRNA_2302 0.87 -1.5
564,716 + -0.1
564,717 + +0.4
564,725 + -0.1
564,763 - -1.0
564,862 + +0.3
564,863 + -0.0
564,867 + -3.0
564,870 + -2.2
564,875 - -2.6
564,886 - -2.4
564,892 + -1.8
564,982 + -0.6
564,987 - -4.3
564,989 + -1.3
564,996 - -1.6
564,997 + +0.1
564,998 - -0.2
565,002 + -3.0
565,009 + -1.3
565,109 - -2.3
565,134 + -0.1
565,136 + -0.8
565,162 + -1.8
565,181 + +0.3
565,188 - -2.2
565,194 + +1.2
565,194 + -1.1
565,207 + -0.8
565,223 + -0.6
565,315 + -1.0
565,316 + -1.1
565,327 - -2.5
565,333 - -1.9
565,339 + -0.4
565,360 - -2.3
565,377 - +0.4
565,388 + -0.6
565,390 - -2.9
565,391 + -1.0
565,395 - -1.6
565,405 + +1.3
565,408 + -1.0
565,416 - -1.0
565,416 + -1.6
565,427 - -0.7
565,432 - -0.0
565,433 + -1.5
565,456 + -2.3
565,561 - +0.2
565,601 + -0.6

Or see this region's nucleotide sequence