Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2352

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10719 and 10720 are separated by 805 nucleotides10720 and 10721 are separated by 410 nucleotides mRNA_2351: 10719 - Hypothetical Protein, at 687,521 to 688,021 10719 mRNA_2352: 10720 - K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e, at 688,827 to 689,561 10720 mRNA_2353: 10721 - SUPERFAMILY--SSF88713, at 689,972 to 692,124 10721

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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688,190 - -0.5
688,342 - -1.8
688,474 + -1.6
688,600 - +0.2
688,781 - -0.3
689,196 - 10720 mRNA_2352 0.50 -1.0
689,352 - 10720 mRNA_2352 0.71 -2.9
689,489 - -2.4
689,514 - -2.5
689,515 - -2.8
689,782 + -1.0
689,785 - -2.2
689,798 - -1.2
689,802 - -0.9
690,248 + 10721 mRNA_2353 0.13 -0.5
690,260 + 10721 mRNA_2353 0.13 +0.0

Or see this region's nucleotide sequence