Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2363

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10730 and 10731 are separated by 392 nucleotides10731 and 10732 are separated by 845 nucleotides mRNA_2362: 10730 - HMMPfam-Pentatricopeptide repeat domain-PF13812, at 706,631 to 709,566 10730 mRNA_2363: 10731 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 709,959 to 711,160 10731 mRNA_2364: 10732 - K20471 COPD, ARCN1, RET2 coatomer subunit delta, at 712,006 to 714,085 10732

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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709,996 - -1.6
710,351 + 10731 mRNA_2363 0.33 -0.5
710,460 - 10731 mRNA_2363 0.42 -0.8
710,617 - 10731 mRNA_2363 0.55 -1.5
710,642 - 10731 mRNA_2363 0.57 -0.9
711,036 - 10731 mRNA_2363 0.90 -0.5
711,042 + -1.0
711,465 - -0.7
711,507 - -2.6
711,509 - -0.4
711,677 + -0.6
711,718 + -1.7
711,722 - -2.9
711,722 + -2.7
711,729 - -0.7
711,743 + -2.2

Or see this region's nucleotide sequence