Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2425

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10792 and 10793 are separated by 119 nucleotides10793 and 10794 are separated by 373 nucleotides mRNA_2424: 10792 - KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation), at 89,637 to 90,963 10792 mRNA_2425: 10793 - K02732 PSMB1 20S proteasome subunit beta 6, at 91,083 to 92,591 10793 mRNA_2426: 10794 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 92,965 to 95,698 10794

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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90,346 - 10792 mRNA_2424 0.53 +0.9
90,434 + 10792 mRNA_2424 0.60 -2.7
90,461 - 10792 mRNA_2424 0.62 -2.0
90,551 - 10792 mRNA_2424 0.69 -0.7
92,662 - -1.2
92,662 - -0.0
92,667 + -0.8
92,681 + -1.4
92,783 - -2.7
92,788 - -3.9
92,828 - -3.6
92,985 + -1.3
93,022 + -0.6
93,118 - +0.3
93,523 + 10794 mRNA_2426 0.20 -0.5
93,553 + 10794 mRNA_2426 0.22 -1.8

Or see this region's nucleotide sequence