Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2441

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10808 and 10809 are separated by 418 nucleotides10809 and 10810 are separated by 415 nucleotides mRNA_2440: 10808 - Hypothetical Protein, at 134,243 to 137,592 10808 mRNA_2441: 10809 - KOG1284 Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase, at 138,011 to 140,441 10809 mRNA_2442: 10810 - HMMPfam-ACT domain-PF13840,SUPERFAMILY--SSF55021, at 140,857 to 142,808 10810

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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137,697 - +1.6
138,025 + -2.3
138,322 + 10809 mRNA_2441 0.13 -1.0
138,626 - 10809 mRNA_2441 0.25 -0.6
138,913 + 10809 mRNA_2441 0.37 -0.2
139,064 + 10809 mRNA_2441 0.43 -0.9
140,039 - 10809 mRNA_2441 0.83 -2.3
140,190 - 10809 mRNA_2441 0.90 -1.0
140,214 + -0.5
140,317 - -1.4
140,389 + -3.5
140,551 - -2.8
140,556 + -2.1
140,584 - -0.1
140,625 - -0.4
140,659 - -2.4
140,659 + -0.9
140,663 + +0.3
140,664 + -0.6
140,670 - -2.4
140,679 - -0.1
140,697 + -0.7
140,729 - -1.3
140,729 - -0.8
140,729 - -1.5
140,730 - -2.0
140,735 - -1.1
140,752 + -0.5
140,752 - -0.9
140,781 - -0.1
140,787 + -1.1
140,827 - -2.7
140,955 - -1.6
141,013 + +0.1

Or see this region's nucleotide sequence