Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2445

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10813 and 10814 are separated by 367 nucleotides mRNA_2445: 10813 - HMMPfam-Protein of unknown function (DUF3533)-PF12051, at 151,366 to 153,133 10813 mRNA_2446: 10814 - K11396 YNG2, EAF4 chromatin modification-related protein YNG2, at 153,501 to 155,365 10814

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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150,369 + -0.0
150,404 - -1.2
150,411 + +0.6
150,419 + -1.9
150,421 + +0.2
150,432 + -1.3
150,546 - -0.1
150,574 + -2.1
150,574 + -4.0
150,581 - -3.8
150,608 + +0.2
150,742 + -1.1
150,885 + -3.0
151,364 - -1.3
151,407 - -0.7
151,722 - 10813 mRNA_2445 0.20 -1.6
152,028 + 10813 mRNA_2445 0.37 -2.2
152,903 + 10813 mRNA_2445 0.87 -1.8
153,036 - -0.6
153,188 - -1.0
153,355 + -1.2
153,357 + -2.7
153,371 - -1.3
153,377 - +1.0

Or see this region's nucleotide sequence