Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2503

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10870 and 10871 are separated by 527 nucleotides mRNA_2502: 10870 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 303,475 to 306,650 10870 mRNA_2503: 10871 - SUPERFAMILY--SSF63829, at 307,178 to 308,891 10871

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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306,308 - 10870 mRNA_2502 0.89 -2.1
306,310 + 10870 mRNA_2502 0.89 -0.4
306,316 - 10870 mRNA_2502 0.89 -1.9
306,318 - 10870 mRNA_2502 0.90 -3.5
306,511 + -1.3
306,570 - +0.4
306,591 - -2.0
306,593 - +0.9
306,594 - +0.6
306,595 + +0.5
306,609 - -0.3
306,611 + -2.5
306,717 - -2.9
306,728 - -2.4
306,734 - +1.1
306,750 + -0.8
306,801 - -3.3
306,818 - +0.6
306,824 + -0.5
306,841 + -0.6
306,847 - -2.0
306,851 - -1.6
306,852 - -2.5
306,856 - -3.3
306,884 - +0.5
306,887 - -2.4
306,887 - -1.5
306,895 + -2.3
306,904 - -2.6
306,982 + -0.8
306,987 - -0.7
306,996 + -1.1
306,998 - -1.8
306,999 + -0.7
307,008 + -1.8
307,021 + -1.4
307,046 - -0.4
307,058 - -1.3
307,063 - -1.8
307,073 - -2.4
307,077 - -2.2
307,081 + -2.8
307,125 - -1.2
307,143 - -2.5
307,149 + -1.7
307,196 + +0.7
307,197 + +0.1
307,199 + -1.8
307,206 - -0.7
307,208 + -0.3
307,208 + -0.6
307,211 + -1.8
307,212 - -2.4
307,222 - -3.6
307,233 + -0.2
307,235 - +0.6
307,238 + -2.7
307,247 + -1.8
307,252 + -4.6
307,253 - +0.9
307,255 - +0.4
307,328 - -2.9
307,710 - 10871 mRNA_2503 0.31 +0.5
307,807 - 10871 mRNA_2503 0.37 +0.6
307,830 + 10871 mRNA_2503 0.38 -1.6
308,270 - 10871 mRNA_2503 0.64 -1.1
308,391 + 10871 mRNA_2503 0.71 -0.5
308,519 - 10871 mRNA_2503 0.78 +0.5
308,794 - -1.2
308,971 + -1.3
308,971 - -0.3
308,993 - -1.3
308,999 + -1.4
309,104 - +0.1
309,134 + +0.0
309,184 + -1.8
309,281 + -2.1
309,441 + -2.2
309,560 + -2.6
309,839 - +0.8

Or see this region's nucleotide sequence