Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2510

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10877 and 10878 are separated by 217 nucleotides10878 and 10879 are separated by 598 nucleotides mRNA_2509: 10877 - HMMPfam-PI31 proteasome regulator-PF08577,HMMPfam-PI31 proteasome regulator N-terminal-PF11566, at 320,843 to 322,229 10877 mRNA_2510: 10878 - K09272 SSRP1 structure-specific recognition protein 1, at 322,447 to 324,875 10878 mRNA_2511: 10879 - Hypothetical Protein, at 325,474 to 325,902 10879

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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322,112 - -0.9
322,138 + -1.6
322,227 + -1.6
322,262 - -1.6
322,280 - -0.6
322,392 - -3.4
322,404 + -3.7
322,423 - +1.1
325,169 + -1.3
325,175 + -1.4
325,764 + 10879 mRNA_2511 0.68 -2.2

Or see this region's nucleotide sequence