Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2514

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10882 and 10883 are separated by 296 nucleotides mRNA_2514: 10882 - Hypothetical Protein, at 330,199 to 330,672 10882 mRNA_2515: 10883 - KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily), at 330,969 to 334,313 10883

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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329,280 - -1.9
329,304 - -3.1
329,307 + -3.0
329,403 + -2.5
329,408 - -0.7
329,565 - -2.1
329,829 - -1.7
329,983 - -1.1
330,024 + -0.8
330,026 + -1.3
330,238 + -3.2
330,404 + 10882 mRNA_2514 0.43 -0.7
330,459 - 10882 mRNA_2514 0.55 -2.6
330,591 - 10882 mRNA_2514 0.83 -2.0
330,605 + 10882 mRNA_2514 0.86 -0.3
330,608 + 10882 mRNA_2514 0.86 -2.7
330,647 - -4.0
330,647 - -1.4
330,741 - +1.6
330,751 - -1.5
330,764 + -1.4
330,787 - -0.5
330,793 - -0.1
330,794 + -1.6
330,794 + -1.6
330,797 - -3.3
330,920 + -2.1
330,924 + -1.7
330,925 + -0.8

Or see this region's nucleotide sequence