Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2537

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10904 and 10905 are separated by 738 nucleotides10905 and 10906 are separated by 169 nucleotides mRNA_2536: 10904 - K15601 KDM3 lysine-specific demethylase 3, at 388,426 to 391,874 10904 mRNA_2537: 10905 - BLAST Alba domain-containing protein [Rhizoctonia solani AG..., at 392,613 to 393,652 10905 mRNA_2538: 10906 - SUPERFAMILY--SSF56112, at 393,822 to 395,821 10906

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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391,689 - +0.4
391,689 - +0.3
391,820 + -3.2
391,966 - -3.4
392,237 + +0.5
392,259 - -0.3
392,261 + +0.5
392,284 - -1.9
392,379 + -2.8
392,402 - -3.4
393,569 + -2.3
393,869 + -2.1
394,613 - 10906 mRNA_2538 0.40 -0.6

Or see this region's nucleotide sequence