Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2545

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10913 and 10914 are separated by 550 nucleotides mRNA_2545: 10913 - K05767 IQGAP2_3 Ras GTPase-activating-like protein IQGAP2/3, at 407,193 to 413,083 10913 mRNA_2546: 10914 - Hypothetical Protein, at 413,634 to 416,302 10914

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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406,324 - -1.8
406,334 + -1.4
406,335 - -0.0
406,336 + -1.1
406,336 - -1.5
406,338 + +0.0
406,342 + +0.3
406,346 - -1.6
406,347 + -3.0
406,347 + -2.0
406,492 - -3.4
406,522 + -2.1
406,944 + -2.7
407,104 - +1.4
407,517 + -0.0
409,502 - 10913 mRNA_2545 0.39 -2.9
409,701 - 10913 mRNA_2545 0.43 -0.4

Or see this region's nucleotide sequence