Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2577

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10944 and 10945 are separated by 153 nucleotides10945 and 10946 are separated by 460 nucleotides mRNA_2576: 10944 - Hypothetical Protein, at 480,885 to 482,213 10944 mRNA_2577: 10945 - HMMPfam-Protein of unknown function (DUF3767)-PF12597, at 482,367 to 483,175 10945 mRNA_2578: 10946 - KOG3574 Acetyl-CoA transporter, at 483,636 to 486,060 10946

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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481,527 - 10944 mRNA_2576 0.48 -1.1
481,967 + 10944 mRNA_2576 0.81 +1.6
482,058 - 10944 mRNA_2576 0.88 -1.2
482,072 + 10944 mRNA_2576 0.89 -0.3
482,330 + -0.5
482,369 + -3.4
482,372 - -0.7
482,479 - 10945 mRNA_2577 0.14 +0.1
483,222 + +0.8
483,389 - +0.2
483,527 + -2.9
483,629 + -0.4
483,887 - 10946 mRNA_2578 0.10 -1.9
484,079 - 10946 mRNA_2578 0.18 -1.8
484,120 - 10946 mRNA_2578 0.20 -1.4

Or see this region's nucleotide sequence