Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2599

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10966 and 10967 are separated by 556 nucleotides10967 and 10968 are separated by 848 nucleotides mRNA_2598: 10966 - Hypothetical Protein, at 566,184 to 566,984 10966 mRNA_2599: 10967 - KOG2619 Fucosyltransferase, at 567,541 to 568,045 10967 mRNA_2600: 10968 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 568,894 to 570,450 10968

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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566,548 + 10966 mRNA_2598 0.45 +0.0
566,715 - 10966 mRNA_2598 0.66 -2.1
566,987 - -0.9
567,007 + -0.4
567,278 - -1.4
567,296 + +0.0
567,528 - +1.7
567,549 - -0.9
567,551 + -1.0
567,702 - 10967 mRNA_2599 0.32 -1.6
567,851 - 10967 mRNA_2599 0.61 -2.4
568,000 + -4.2
568,116 - -2.3
568,138 - -0.1
568,143 - -1.3
568,152 - -1.0
568,154 + -0.5
568,175 + +1.3
568,177 - -2.0
568,179 - -1.8
568,181 - -2.0
568,185 + -2.5
568,190 - -2.1
568,197 + -3.1
568,201 - -0.5
568,205 - -2.4
568,216 + -0.4
568,297 - -3.5
568,306 - -0.1
568,317 - -0.5
568,331 + -0.9
568,353 - +0.3
568,361 - -1.3
568,414 - -4.1
568,453 + -2.4
568,498 - -1.3
568,587 - -2.2
568,782 - -1.5
568,783 + -2.1
568,904 - -0.5
568,932 + -0.7
568,946 - -2.9
568,948 - -1.7
568,951 + -0.9
568,957 + -0.7
568,957 + -2.1
568,958 - -1.5
568,958 - -1.0
568,964 - -1.2
568,965 + -1.6
568,968 + -1.3
568,968 - -2.6
568,971 + -3.4
568,971 + -0.9
568,971 + +0.3
568,971 - +1.2
568,971 + -0.2
568,971 + -1.5
568,975 - -2.6
568,976 + -1.1
568,978 + -1.0
568,980 + -0.8
568,983 - -3.5
568,984 - -1.8
568,986 + -0.7
568,986 - -0.3
568,990 - -2.6
568,990 + +0.6
568,992 - -2.4
568,993 + -1.5
568,993 + -1.9
568,994 + -1.6
568,996 + -0.5
568,997 + -0.7
568,997 + -1.9
568,999 + -1.0
569,002 + -0.3
569,004 + +1.9
569,006 + +0.8
569,018 - -0.7

Or see this region's nucleotide sequence