Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2627

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10994 and 10995 are separated by 928 nucleotides10995 and 10996 are separated by 627 nucleotides mRNA_2626: 10994 - Interpro GDP-fucose protein O-fucosyltransferase, at 621,778 to 623,321 10994 mRNA_2627: 10995 - K05941 E2.3.2.15 glutathione gamma-glutamylcysteinyltransferase, at 624,250 to 625,308 10995 mRNA_2628: 10996 - K09468 MSN2_4 zinc finger protein MSN2/4, at 625,936 to 628,159 10996

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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623,305 - -0.5
623,452 - -1.2
623,457 - +0.6
623,460 + -2.2
623,461 + -0.8
623,586 + +1.4
623,608 + -3.0
623,620 - -1.6
623,622 - -2.9
623,627 - -1.9
623,631 - -1.4
623,752 + -1.0
623,761 + -1.4
623,764 - -2.4
623,771 - -1.2
623,906 + -5.0
623,908 + -1.5
623,913 + -1.3
623,919 + -2.0
624,074 + -2.8
624,167 + -1.1
624,467 + 10995 mRNA_2627 0.20 -0.5
624,787 + 10995 mRNA_2627 0.51 -0.1
624,787 + 10995 mRNA_2627 0.51 -0.8
624,797 + 10995 mRNA_2627 0.52 +1.7
624,948 - 10995 mRNA_2627 0.66 -2.6
625,525 + -1.9
625,526 + -0.4
625,531 + -1.4
625,652 - -1.9
625,658 - -2.7
625,663 + -1.3
625,675 + +1.6
625,692 + -3.7
625,816 - -3.1
625,821 + -2.1
625,831 + -1.8
625,942 - -0.3
626,101 + -0.0

Or see this region's nucleotide sequence