Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2634

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11001 and 11002 are separated by 313 nucleotides11002 and 11003 are separated by 115 nucleotides mRNA_2633: 11001 - HMMPfam-Nucleotidyl transferase-PF00483,SUPERFAMILY--SSF53448,SUPERFAMILY--SSF56112,SUPERFAMILY--SSF56784, at 638,578 to 641,420 11001 mRNA_2634: 11002 - KOG2234 Predicted UDP-galactose transporter, at 641,734 to 644,523 11002 mRNA_2635: 11003 - KOG2615 Permease of the major facilitator superfamily, at 644,639 to 646,229 11003

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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640,846 + 11001 mRNA_2633 0.80 -1.3
640,893 - 11001 mRNA_2633 0.81 -1.8
640,920 + 11001 mRNA_2633 0.82 +0.4
641,032 + 11001 mRNA_2633 0.86 -3.5
641,184 - -1.3
641,199 - +0.4
641,230 + -1.1
641,310 + -0.9
641,318 - -2.5
641,339 - -2.4
641,353 + -1.5
641,515 + -2.4
641,541 - -2.7
641,544 + -1.1
641,633 + -1.1
641,638 - -1.7
641,639 + -0.1
641,639 + -3.7
641,646 + -1.5
641,664 - -0.1
641,665 - -2.4
641,666 + +0.1
641,826 + -2.5
641,947 - -2.8
641,974 + -2.0
642,508 - 11002 mRNA_2634 0.28 -1.7
642,707 + 11002 mRNA_2634 0.35 -4.6
642,726 - 11002 mRNA_2634 0.36 -1.3
642,745 + 11002 mRNA_2634 0.36 -0.1
642,745 + 11002 mRNA_2634 0.36 +0.3
642,864 - 11002 mRNA_2634 0.41 -1.7
642,881 + 11002 mRNA_2634 0.41 -2.4
643,005 - 11002 mRNA_2634 0.46 -3.2
643,022 - 11002 mRNA_2634 0.46 -1.4
643,035 + 11002 mRNA_2634 0.47 -1.4
643,329 - 11002 mRNA_2634 0.57 -1.9
643,518 - 11002 mRNA_2634 0.64 -1.7
643,704 - 11002 mRNA_2634 0.71 -2.1
643,713 + 11002 mRNA_2634 0.71 -2.8
643,725 + 11002 mRNA_2634 0.71 -1.6
643,793 - 11002 mRNA_2634 0.74 -4.4
644,056 - 11002 mRNA_2634 0.83 -1.2
644,060 - 11002 mRNA_2634 0.83 -2.2
644,152 + 11002 mRNA_2634 0.87 -0.4
644,175 - 11002 mRNA_2634 0.87 -1.0
644,226 + 11002 mRNA_2634 0.89 -1.4
644,433 - -3.1
644,733 + -1.6
644,761 + -1.3
644,894 + 11003 mRNA_2635 0.16 -0.6
645,042 - 11003 mRNA_2635 0.25 -1.1
645,054 + 11003 mRNA_2635 0.26 -1.8
645,119 - 11003 mRNA_2635 0.30 -2.3
645,182 - 11003 mRNA_2635 0.34 -3.2
645,317 - 11003 mRNA_2635 0.43 +0.2
645,317 + 11003 mRNA_2635 0.43 +0.4
645,384 + 11003 mRNA_2635 0.47 -2.3
645,394 + 11003 mRNA_2635 0.47 -2.1
645,474 - 11003 mRNA_2635 0.52 -0.7

Or see this region's nucleotide sequence