Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2644

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11011 and 11012 are separated by 169 nucleotides11012 and 11013 are separated by 325 nucleotides mRNA_2643: 11011 - K01254 LTA4H leukotriene-A4 hydrolase, at 661,173 to 664,262 11011 mRNA_2644: 11012 - SUPERFAMILY--SSF52058, at 664,432 to 665,418 11012 mRNA_2645: 11013 - Hypothetical Protein, at 665,744 to 666,738 11013

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
663,447 + 11011 mRNA_2643 0.74 -2.7
663,624 - 11011 mRNA_2643 0.79 -1.0
663,770 + 11011 mRNA_2643 0.84 +0.5
663,897 + 11011 mRNA_2643 0.88 -1.4
664,051 - -1.3
664,272 + +0.2
664,351 + -0.5
664,428 - +1.5
664,460 + -0.1
664,478 + -0.4
664,481 - -2.4
664,487 + -1.6
664,604 - 11012 mRNA_2644 0.17 -1.1
665,337 - -1.5
665,575 - -1.0
665,655 + -2.7
665,794 - +2.0
665,794 - -0.7
665,888 + 11013 mRNA_2645 0.14 -3.8
665,934 + 11013 mRNA_2645 0.19 +0.5
666,100 - 11013 mRNA_2645 0.36 -2.5
666,102 + 11013 mRNA_2645 0.36 -3.0
666,207 + 11013 mRNA_2645 0.47 -1.4
666,375 + 11013 mRNA_2645 0.63 -1.0

Or see this region's nucleotide sequence