Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2682

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11049 and 11050 are separated by 996 nucleotides11050 and 11051 are separated by 175 nucleotides mRNA_2681: 11049 - Hypothetical Protein, at 765,943 to 766,697 11049 mRNA_2682: 11050 - K00589 MET1 uroporphyrin-III C-methyltransferase, at 767,694 to 769,770 11050 mRNA_2683: 11051 - K07300 chaA, CAX Ca2+-H+ antiporter, at 769,946 to 774,939 11051

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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767,204 + -1.9
767,220 + -0.5
767,234 + -0.1
767,451 - +0.1
767,471 - -0.7
767,471 + -1.6
767,556 + -2.9
767,578 + -1.9
767,780 + -2.0
768,242 - 11050 mRNA_2682 0.26 +0.6
768,350 - 11050 mRNA_2682 0.32 -1.4
768,351 - 11050 mRNA_2682 0.32 -0.2
768,842 + 11050 mRNA_2682 0.55 -1.2
768,928 - 11050 mRNA_2682 0.59 -1.8
769,104 - 11050 mRNA_2682 0.68 -2.6
769,708 - -1.3
769,779 + -0.4
769,825 + -1.8
769,911 - -1.6
770,065 + -0.2
770,157 + -3.1
770,200 - -0.1
770,328 + -2.8
770,451 - 11051 mRNA_2683 0.10 +0.0
770,468 - 11051 mRNA_2683 0.10 -1.7
770,548 - 11051 mRNA_2683 0.12 -0.6
770,562 + 11051 mRNA_2683 0.12 -0.6
770,594 + 11051 mRNA_2683 0.13 +1.4
770,754 - 11051 mRNA_2683 0.16 -0.7

Or see this region's nucleotide sequence