Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2685

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11052 and 11053 are separated by 762 nucleotides mRNA_2684: 11052 - K02144 ATPeV1H V-type H+-transporting ATPase subunit H, at 775,644 to 777,796 11052 mRNA_2685: 11053 - Hypothetical Protein, at 778,559 to 779,074 11053

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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777,797 + -2.0
777,799 - -2.8
777,812 - -0.8
777,843 + -1.1
777,919 - -1.2
777,954 - -2.9
777,954 - -0.4
777,993 + -2.2
778,011 - -0.8
778,082 - -3.8
778,089 - -2.9
778,126 + -0.3
778,203 + +0.2
778,222 - -0.0
778,233 - -5.1
778,253 - +1.4
778,282 - -3.6
778,306 + -0.8
778,352 - -0.9
778,367 - -2.7
778,426 - -2.3
778,433 - -2.2
778,453 + +2.3
778,487 - +0.1
778,495 - -3.1
778,520 + -2.7
778,538 - -0.2
778,549 - -1.6
778,550 - +0.6
778,590 - +0.2
778,596 + -2.2
778,638 - 11053 mRNA_2685 0.15 -1.1
778,697 + 11053 mRNA_2685 0.27 -1.8
778,714 + 11053 mRNA_2685 0.30 -1.1
778,719 + 11053 mRNA_2685 0.31 -0.9
778,744 - 11053 mRNA_2685 0.36 -2.7
778,761 - 11053 mRNA_2685 0.39 -2.3
778,762 + 11053 mRNA_2685 0.39 -0.1
778,763 + 11053 mRNA_2685 0.40 -0.9
778,786 + 11053 mRNA_2685 0.44 +1.1
778,826 - 11053 mRNA_2685 0.52 -0.7
778,834 - 11053 mRNA_2685 0.53 -0.1
778,838 - 11053 mRNA_2685 0.54 -0.9
778,838 - 11053 mRNA_2685 0.54 -2.9
778,842 - 11053 mRNA_2685 0.55 -2.7
778,847 + 11053 mRNA_2685 0.56 -2.6
778,848 + 11053 mRNA_2685 0.56 -1.2
778,852 - 11053 mRNA_2685 0.57 -2.0
778,853 + 11053 mRNA_2685 0.57 -2.0
778,857 - 11053 mRNA_2685 0.58 -1.5
778,866 - 11053 mRNA_2685 0.59 -0.8
778,869 - 11053 mRNA_2685 0.60 -3.1
778,870 - 11053 mRNA_2685 0.60 -1.7
778,908 + 11053 mRNA_2685 0.68 -2.5
778,913 - 11053 mRNA_2685 0.69 -0.7
778,913 + 11053 mRNA_2685 0.69 -0.0
778,914 + 11053 mRNA_2685 0.69 -3.4
778,935 - 11053 mRNA_2685 0.73 +0.6
778,976 - 11053 mRNA_2685 0.81 -1.3
778,981 + 11053 mRNA_2685 0.82 +0.3
779,004 - 11053 mRNA_2685 0.86 -2.8
779,024 - -2.9
779,027 - +0.5
779,032 - -1.5
779,067 - -1.8
779,094 - -0.6
779,106 + -0.8
779,111 - -1.8
779,116 - -2.2
779,118 - -0.9
779,121 - -1.2
779,122 - -0.4
779,122 + -2.4
779,130 - -0.8
779,135 - -2.1
779,143 - -2.9
779,157 + -0.9
779,159 + -1.6
779,159 + +0.1
779,161 + -2.3
779,161 - -0.6
779,162 + -2.0
779,162 + +0.1
779,163 + -0.1
779,171 - -0.1
779,176 - -0.2
779,179 - -0.1
779,181 - -2.0
779,182 - -0.6
779,183 - -2.1
779,184 - -1.6
779,186 - -3.4

Or see this region's nucleotide sequence