Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2686

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11054 and 11055 are separated by 595 nucleotides mRNA_2686: 11054 - Interpro Fungal potassium channel 0, at 510 to 3,087 11054 mRNA_2687: 11055 - K16542 CDK5RAP2 CDK5 regulatory subunit-associated protein 2, at 3,683 to 8,144 11055

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1 + -1.9
28 + -3.4
28 + -1.7
37 + +0.7
37 + -1.3
38 + +1.9
44 + -1.2
48 - -2.5
49 + -3.6
49 + +0.6
49 + -2.1
49 + -1.8
49 + +0.1
49 + -1.9
49 - -2.2
52 + +1.4
54 - -3.1
54 - -1.3
58 + -2.8
62 + -1.7
70 - -3.3
73 + -0.7
74 - +0.8
74 + -0.4
112 - -0.8
120 - +0.5
138 + -0.1
142 + -0.2
142 + +0.2
142 + -1.4
144 + -1.4
145 - -1.5
147 + -3.1
152 + -3.1
159 + -1.4
159 - -3.3
163 + +1.4
169 - -0.8
170 + +0.3
171 - -0.9
173 + -0.8
175 - -0.5
176 + -0.5
177 + -3.8
183 + -1.9
193 + -0.9
205 + -0.6
231 + -1.2
232 + -0.9
235 - -1.9
252 - -2.5
259 + -1.9
259 + -2.4
259 + +1.1
262 - -2.2
269 + +0.3
273 + -0.9
275 - -2.3
289 + -1.3
299 + -2.6
312 - -2.0
339 + -1.1
352 + -1.6
357 + -2.0
358 + -1.7
368 - -0.6
417 - -1.4
429 + +1.0
434 + +0.3
445 + -0.6
462 + +0.2
462 + -0.4
502 + -2.0
529 - -4.0
540 - -2.8
561 + -1.6
584 + -2.1
584 - -3.3
584 + -1.3
633 + -1.6
636 + -0.7
646 + -4.4
703 - -0.1
736 - -1.3
772 - 11054 mRNA_2686 0.10 +0.8
845 - 11054 mRNA_2686 0.13 +0.9
871 + 11054 mRNA_2686 0.14 -0.1
911 + 11054 mRNA_2686 0.16 -3.3
919 - 11054 mRNA_2686 0.16 -1.5
922 + 11054 mRNA_2686 0.16 -1.1
937 - 11054 mRNA_2686 0.17 -2.7
946 - 11054 mRNA_2686 0.17 -2.6
1,039 + 11054 mRNA_2686 0.21 -1.6
1,042 - 11054 mRNA_2686 0.21 -2.7
1,056 + 11054 mRNA_2686 0.21 -1.7
1,056 + 11054 mRNA_2686 0.21 +1.2
1,059 - 11054 mRNA_2686 0.21 -0.8
1,059 - 11054 mRNA_2686 0.21 -1.9
1,079 + 11054 mRNA_2686 0.22 -0.6
1,089 + 11054 mRNA_2686 0.22 +0.8
1,090 - 11054 mRNA_2686 0.22 -1.4
1,099 - 11054 mRNA_2686 0.23 -1.5
1,116 - 11054 mRNA_2686 0.24 -2.1
1,219 - 11054 mRNA_2686 0.28 -1.8
1,230 + 11054 mRNA_2686 0.28 -1.3
1,258 - 11054 mRNA_2686 0.29 -0.6
1,270 - 11054 mRNA_2686 0.29 -0.8
1,272 + 11054 mRNA_2686 0.30 -2.2
1,324 + 11054 mRNA_2686 0.32 -0.5
1,351 + 11054 mRNA_2686 0.33 -1.8
1,464 + 11054 mRNA_2686 0.37 -1.2
1,508 + 11054 mRNA_2686 0.39 -1.5
1,514 - 11054 mRNA_2686 0.39 -1.1
1,611 + 11054 mRNA_2686 0.43 -0.0
1,642 + 11054 mRNA_2686 0.44 -1.2
1,671 + 11054 mRNA_2686 0.45 -2.4
1,680 + 11054 mRNA_2686 0.45 -4.2
1,683 - 11054 mRNA_2686 0.46 -3.2
1,684 + 11054 mRNA_2686 0.46 -0.8
1,699 + 11054 mRNA_2686 0.46 -2.8
1,836 + 11054 mRNA_2686 0.51 -1.0
1,912 + 11054 mRNA_2686 0.54 -1.5
1,961 - 11054 mRNA_2686 0.56 -0.8
2,068 - 11054 mRNA_2686 0.60 -1.8
2,071 - 11054 mRNA_2686 0.61 -0.6
2,079 + 11054 mRNA_2686 0.61 -0.6
2,096 - 11054 mRNA_2686 0.62 -0.7
2,112 + 11054 mRNA_2686 0.62 -0.3
2,128 + 11054 mRNA_2686 0.63 -1.3
2,140 + 11054 mRNA_2686 0.63 -0.6
2,141 - 11054 mRNA_2686 0.63 +0.1
2,158 + 11054 mRNA_2686 0.64 -5.1
2,196 + 11054 mRNA_2686 0.65 -3.7
2,238 + 11054 mRNA_2686 0.67 -1.9
2,250 - 11054 mRNA_2686 0.67 -0.4
2,271 + 11054 mRNA_2686 0.68 +1.7
2,404 - 11054 mRNA_2686 0.73 -0.7
2,419 + 11054 mRNA_2686 0.74 -3.3
2,442 - 11054 mRNA_2686 0.75 -0.9
2,444 - 11054 mRNA_2686 0.75 -1.4
2,534 - 11054 mRNA_2686 0.79 -1.4
2,547 - 11054 mRNA_2686 0.79 -0.3
2,564 + 11054 mRNA_2686 0.80 -0.4
2,685 - 11054 mRNA_2686 0.84 -0.9
2,806 + 11054 mRNA_2686 0.89 -2.2
2,806 - 11054 mRNA_2686 0.89 -1.2
2,814 - 11054 mRNA_2686 0.89 -2.2
2,938 + -2.4
2,971 + -1.6
2,984 - -1.2
3,056 - -0.1
3,090 + -0.1
3,127 + -2.9
3,135 - -0.6
3,141 + +0.0
3,282 + +0.4
3,380 + -1.6
3,409 - -0.7

Or see this region's nucleotide sequence