Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2783

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11150 and 11151 are separated by 847 nucleotides mRNA_2782: 11150 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 198,574 to 201,487 11150 mRNA_2783: 11151 - BLAST NADH dehydrogenase (ubiquinone) Fe-S protein 5 [C..., at 202,335 to 202,970 11151

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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201,566 - -4.7
201,864 - -1.3
201,867 - -1.6
201,877 - +0.4
201,878 + -3.5
201,878 + -3.1
201,894 + -1.3
202,018 - -1.8
202,020 + +0.4
202,030 + -1.7
202,038 - -0.5
202,041 + -0.6
202,042 + -1.0
203,023 + -0.3
203,193 - +0.3
203,214 - -3.4
203,217 - -3.1
203,347 - -2.1
203,359 + -3.2
203,359 + -3.5
203,507 - -2.0
203,507 - -1.3
203,512 - -1.4
203,521 + -1.2
203,844 - -0.8

Or see this region's nucleotide sequence