Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2794

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11161 and 11162 are separated by 430 nucleotides11162 and 11163 are separated by 363 nucleotides mRNA_2793: 11161 - KOG3834 Golgi reassembly stacking protein GRASP65, contains PDZ domain, at 228,041 to 229,604 11161 mRNA_2794: 11162 - BLAST protein FAM72A [Rattus norvegicus], at 230,035 to 232,978 11162 mRNA_2795: 11163 - SUPERFAMILY--SSF56112, at 233,342 to 236,388 11163

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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229,080 - 11161 mRNA_2793 0.66 -0.1
229,253 + 11161 mRNA_2793 0.77 -1.3
229,263 + 11161 mRNA_2793 0.78 -1.1
229,264 - 11161 mRNA_2793 0.78 -1.0
229,314 - 11161 mRNA_2793 0.81 -0.5
229,318 + 11161 mRNA_2793 0.82 -0.8
229,528 - -1.0
229,546 + -0.4
229,553 + -0.4
229,556 + -0.9
229,806 + -1.0
229,838 + -1.2
229,846 + -0.2
229,873 + -0.7
229,958 + +0.0
229,989 - -3.1
229,991 + -0.3
229,991 - -2.3
230,289 - +0.0
230,312 + -1.7
230,595 + 11162 mRNA_2794 0.19 -1.2
230,610 - 11162 mRNA_2794 0.20 +1.2
230,615 + 11162 mRNA_2794 0.20 -0.9
230,616 + 11162 mRNA_2794 0.20 -1.5
230,616 - 11162 mRNA_2794 0.20 -0.2
230,758 - 11162 mRNA_2794 0.25 -0.9
230,889 - 11162 mRNA_2794 0.29 +0.1
230,895 - 11162 mRNA_2794 0.29 -3.3
231,099 + 11162 mRNA_2794 0.36 -0.8
231,212 - 11162 mRNA_2794 0.40 -0.7
231,212 - 11162 mRNA_2794 0.40 -1.3
231,363 + 11162 mRNA_2794 0.45 +0.7
231,614 - 11162 mRNA_2794 0.54 -0.3
232,039 - 11162 mRNA_2794 0.68 +2.3
232,275 - 11162 mRNA_2794 0.76 -0.7
232,302 - 11162 mRNA_2794 0.77 -2.9
232,485 + 11162 mRNA_2794 0.83 -2.9
232,513 + 11162 mRNA_2794 0.84 -2.3
232,545 + 11162 mRNA_2794 0.85 -1.3
232,635 + 11162 mRNA_2794 0.88 -0.1
232,635 - 11162 mRNA_2794 0.88 -0.4
232,637 + 11162 mRNA_2794 0.88 +0.0
232,643 - 11162 mRNA_2794 0.89 -0.9
232,668 - 11162 mRNA_2794 0.89 -1.8
232,673 - 11162 mRNA_2794 0.90 -0.7
232,673 - 11162 mRNA_2794 0.90 -1.4
232,673 - 11162 mRNA_2794 0.90 -3.8
232,674 + 11162 mRNA_2794 0.90 -3.9
232,674 + 11162 mRNA_2794 0.90 -1.5
232,674 + 11162 mRNA_2794 0.90 -0.4
232,674 + 11162 mRNA_2794 0.90 -0.9
232,684 + -1.3
232,738 + -1.2
232,885 - -4.3
232,905 - +0.9
232,935 - -3.8
232,935 - +0.6
232,953 - -1.2
232,958 + -1.6
233,045 - -1.1
233,077 - -1.4
233,080 + -0.7
233,087 + -1.8
233,091 + -1.4
233,113 - -1.8
233,183 + -0.5
233,239 - -1.6
233,379 - +0.4
233,642 - -1.7
233,772 + 11163 mRNA_2795 0.14 -3.2

Or see this region's nucleotide sequence