Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2806

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11173 and 11174 are separated by 168 nucleotides mRNA_2805: 11173 - KOG0128 RNA-binding protein SART3 (RRM superfamily), at 259,286 to 263,641 11173 mRNA_2806: 11174 - Hypothetical Protein, at 263,810 to 265,112 11174

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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263,764 - +0.2
264,265 - 11174 mRNA_2806 0.35 -1.3
264,286 - 11174 mRNA_2806 0.37 -0.8
264,300 - 11174 mRNA_2806 0.38 +0.8
264,335 + 11174 mRNA_2806 0.40 -2.5
264,346 + 11174 mRNA_2806 0.41 -2.8
264,348 - 11174 mRNA_2806 0.41 -0.1
264,476 + 11174 mRNA_2806 0.51 -1.4
264,577 - 11174 mRNA_2806 0.59 -0.9
264,733 - 11174 mRNA_2806 0.71 -0.3
264,795 + 11174 mRNA_2806 0.76 -1.5
265,952 + -0.6
266,107 - -0.0

Or see this region's nucleotide sequence