Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2813

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11180 and 11181 are separated by 479 nucleotides11181 and 11182 are separated by 343 nucleotides mRNA_2812: 11180 - Hypothetical Protein, at 282,125 to 283,432 11180 mRNA_2813: 11181 - SUPERFAMILY--SSF52047, at 283,912 to 285,183 11181 mRNA_2814: 11182 - Hypothetical Protein, at 285,527 to 286,439 11182

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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282,960 + 11180 mRNA_2812 0.64 -3.7
283,099 + 11180 mRNA_2812 0.74 -0.7
283,289 - 11180 mRNA_2812 0.89 -0.5
283,378 + -3.0
283,428 + -2.3
283,530 - -1.8
283,547 - -1.2

Or see this region's nucleotide sequence