Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2859

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11226 and 11227 are separated by 336 nucleotides11227 and 11228 are separated by 332 nucleotides mRNA_2858: 11226 - HMMPfam-Translocon-associated protein (TRAP), alpha subunit-PF03896, at 383,912 to 385,065 11226 mRNA_2859: 11227 - Hypothetical Protein, at 385,402 to 386,720 11227 mRNA_2860: 11228 - K11811 arsH arsenical resistance protein ArsH, at 387,053 to 388,029 11228

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
384,599 - 11226 mRNA_2858 0.60 -3.4
384,709 - 11226 mRNA_2858 0.69 -1.8
384,754 + 11226 mRNA_2858 0.73 -1.8
385,032 + -1.3
385,286 - -0.6
385,300 + -4.0
385,755 + 11227 mRNA_2859 0.27 -0.2
386,041 + 11227 mRNA_2859 0.48 -1.5
386,198 + 11227 mRNA_2859 0.60 -2.1
386,476 - 11227 mRNA_2859 0.81 +0.4
386,606 + +2.2
386,710 - -0.6
386,731 + -2.8
386,760 - -0.1
386,761 - -2.8
386,766 + -0.5
386,768 - -0.6
386,771 - -2.2
386,775 - -3.5
386,776 + -2.8
386,791 - -0.3
386,793 + -1.5
386,793 + -1.4
386,794 + -0.0
386,795 - -0.5
386,815 + -5.0
386,816 + -1.1
386,834 + -1.1
386,846 + -2.2
386,850 + -5.0
386,861 + -1.6
386,875 + -2.3
386,975 + -1.9
386,992 - -1.1
387,132 + -0.8
387,436 + 11228 mRNA_2860 0.39 -0.6

Or see this region's nucleotide sequence