Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2864

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11231 and 11232 are separated by 129 nucleotides11232 and 11233 are separated by 298 nucleotides mRNA_2863: 11231 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 392,445 to 393,702 11231 mRNA_2864: 11232 - KOG2699 Predicted ubiquitin regulatory protein, at 393,832 to 395,067 11232 mRNA_2865: 11233 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 395,366 to 397,041 11233

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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393,217 + 11231 mRNA_2863 0.61 -0.8
393,220 - 11231 mRNA_2863 0.62 +0.1
393,520 + 11231 mRNA_2863 0.85 -0.9
393,639 + -0.8
393,642 + -1.1
393,794 + -0.9
393,918 - -2.1
393,925 + -0.2
393,933 - -0.9
394,056 - 11232 mRNA_2864 0.18 -1.0
394,057 - 11232 mRNA_2864 0.18 -1.4
394,069 + 11232 mRNA_2864 0.19 +0.2
394,751 - 11232 mRNA_2864 0.74 -0.8
394,992 - +0.4
395,051 - -1.4
395,071 + +0.7
395,224 + -1.4
395,224 + -3.2
395,511 + +2.5
395,762 - 11233 mRNA_2865 0.24 -0.6
395,826 + 11233 mRNA_2865 0.27 +0.5
396,060 + 11233 mRNA_2865 0.41 -1.3

Or see this region's nucleotide sequence