Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2875

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11242 and 11243 are separated by 398 nucleotides11243 and 11244 are separated by 300 nucleotides mRNA_2874: 11242 - K00555 TRMT1, trm1 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase, at 417,421 to 420,167 11242 mRNA_2875: 11243 - HMMPfam-NMT1/THI5 like-PF09084,SUPERFAMILY--SSF53850, at 420,566 to 422,079 11243 mRNA_2876: 11244 - K18715 NUP159 nucleoporin NUP159, at 422,380 to 429,450 11244

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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419,578 - 11242 mRNA_2874 0.79 -0.7
420,151 - -1.9
420,155 + -1.6
420,397 - -0.3
420,604 + -1.8
420,729 - 11243 mRNA_2875 0.11 -1.0
420,794 - 11243 mRNA_2875 0.15 -0.7
420,794 - 11243 mRNA_2875 0.15 -3.7
420,835 + 11243 mRNA_2875 0.18 -1.0
420,883 - 11243 mRNA_2875 0.21 -3.9
420,887 + 11243 mRNA_2875 0.21 -3.3
421,298 - 11243 mRNA_2875 0.48 -2.4
421,326 - 11243 mRNA_2875 0.50 -1.9
421,348 + 11243 mRNA_2875 0.52 -2.9
421,423 - 11243 mRNA_2875 0.57 -1.7
421,590 - 11243 mRNA_2875 0.68 +0.6
421,591 + 11243 mRNA_2875 0.68 -1.9
421,870 - 11243 mRNA_2875 0.86 +0.1
421,899 + 11243 mRNA_2875 0.88 -1.6
421,899 + 11243 mRNA_2875 0.88 -0.6
421,903 + 11243 mRNA_2875 0.88 +0.9
422,210 - +0.6
422,315 - -1.9
422,343 - -2.4

Or see this region's nucleotide sequence